Very Partial Resources on Mathematics and Genetics.

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General Resources

Cell Biology Glossary . Good introductory glossary with links to other in-depth resources.
CHI's Genome Link Articles
Genome Research and genetics news

The New Genetics: A Resource for Students and Teachers

Mathematical Biology If you love mathematics and are curious about mathematical applications to biology. This is the site for you. Only for machines with lots of memory to run shockwave.

MAM 2002: Related Resources
Bioinformatics: Databases
BLAST. Growing database of DNA and protein sequences. Very powerful. You can enter protein sequences, DNA sequences or look up protein/DNA sequences and compare organisms. The BLAST software searches for homologies.

OMIM Home Page -- Online Mendelian Inheritance in Man Wonderful data base concerning human genetics. A bit difficult for the non biologist to understand. A useful place to look for literature on a genetically based disorder in humans.

The SNP Consortium Home Page SNP's are Single Nucleotide Polymorphisms and these have become important in studying human evolution and migration patterns.
TIGR Databases - The Institute for Genomic Research
Welcome to PubMed If you are working on a paper related to medicine, you might enjoy medline which you can search for free on PubMed. Of course at JCCC you can also do this but here's another way.
Genome Links
The Baker Laboratory Homepage. David Baker has been developing new methods to predict protein folding.

Bioinformatics:Gene Expression

DNA Microarray (Genome Chip) (by Leming Shi, PhD)

Genomes to Life

GenDoc GenDoc is a protein sequence comparison program for phylogenetic analysis. Has a good discussion of calculating similarity between amino acids in terms of the mutations required to go from one amino acid to another.

Human Genome Project Information. This site reviews the progress that has and is being made to map all the DNA bases in the human genome. Also discusses the role our increased understanding of human genetics will have on your life: not your grand kids lives....your life.

Initial sequencing and analysis of the human genome

Nature genome gateway - human genome

Nature genome gateway - links

National Center for Biotechnology Information Government clearing house. Government clearinghouse. Links to major databases, basic biotechnology information and research.

Research on Bioinformatics

Sequencing the Human Genome  A lecture by Craig Venter at the Wood's Hole Marine Biological Laboratory(Aug 17, 2001). Venter is one of the pioneers of modern gene sequencing.

Functional Genomics
Cancer Genomics , Links from the Whitehead Institute. Includes many links to genetic databases and mathematical applications.

FunctionalGenomics.org.uk - Welcome

Integrated Approaches For Functional Genomics

IPAM Functional Genomics Tutorials

Princeton Brain Genomics

Biological Tools

Mathematical and Computational Tools.

Applets for Neural Networks and Artificial Life
Algorithms And Statistics For Pattern Recognition In Biological Macromolecules And The Inference Of Gene Structure And Function
Artificial Life Online

 An optimal procedure for gap closing in whole genome shotgun sequencing, Proc. 2001 RECOMB, ACM Press, pp. 22-3[pdf]

Entropy in Biology

Game Theory . Al Roth, Harvard University.

Hidden Markov Models in the Biological Sciences
Hidden Markov Models and Protein Sequence Analysis
Introduction to Hidden Markov Models

Mathematics of Genome Analysis

NCGR Homepage
 
Practical Guide to Genetic Algorithms .
This site attempts to show you how to use what we know about evolution to solve practical problems in other sciences.
Self-Organizing Maps
Statistical Science Web: Methodology
The Genetic Algorithms Archive

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04/08/02 pgd